Software guides¶

We provide a guide for each of the packages below. Each one tells you which module to load, which queue and how much memory to request, and gives you a job file to start from.

• BEAST
• BirdNET
• BLAST
• Blast2GO
• BUSCO
• MaSuRCA
• SMC++
• SPAdes
• Local databases: BLAST, Dfam and Kraken databases kept on Hydra

If your package is not here, it may still be installed. Installed modules lists every bio/ and tools/ package, and module help bio/NAME on a login node tells you what a module provides and how to run it. If it is on Bioconda or conda-forge, you can install it yourself. See Python and conda. If it needs a license, a build against the cluster's MPI or CUDA libraries, or a shared database, email [email protected].

Last updated 2026-10-03