Installed modules¶
This list is generated from module -t avail. Load a package with module load PREFIX/NAME/VERSION; (default) marks the version loaded when no version is given. The prefix bioinformatics/ is an alias of bio/. The compilers and their MPI builds (gcc/, intel/, nvidia/) are under Compilers, libraries and MPI; the list of module files (SI network or VPN) is the complete inventory, including versions this list omits.
bio/¶
| Module | Versions |
|---|---|
abyss |
2.3.7(default) |
admixtools |
7.0.2(default) |
admixture |
1.3.0(default) |
angsd |
0.941(default) |
assembly_stats |
0.1.4(default) |
aster |
1.16, 1.19(default) |
astral |
5.7.8(default), 5.15.5-MP |
augustus |
3.5.0(default) |
basespace |
1.5.4, 1.6.2, 1.7.0(default) |
bayescan |
2.1(default) |
bbmap |
39.06(default) |
bcftools |
1.19(default) |
beagle |
4.0.1, 4.0.1-j8, 4.0.1-j8-cuda, 4.0.1-j17, 4.0.1-j17-cuda(default) |
beast |
2.7.5, 2.7.6(default), 2.7.7, 2.7.8 |
bedtools |
2.31.1(default) |
bioawk |
1.0(default) |
bioperl |
1.7.8(default) |
biopython |
1.83(default) |
birdnet |
2.4.0(default), 2.4.0-gpu |
blast |
2.15.0(default), 2.17.0 |
blast2go |
1.5.1(default) |
blat |
36(default) |
blobtoolkit |
3.3.10(default) |
blobtools |
1.1.1(default) |
bowtie2 |
2.5.3(default) |
bpp |
4.7.0(default) |
busco |
5.7.0(default), 6.0.0 |
bwa |
0.7.17(default) |
cactus |
2.8.0(default) |
canu |
2.2(default) |
cd-hit |
4.8.1(default) |
cutadapt |
4.7(default), 5.0 |
dates |
753(default) |
diamond |
2.1.9(default) |
dorado |
1.0.2(default) |
eggnog-mapper |
2.1.13(default) |
ensembl-vep |
112.0(default) |
exabayes |
1.5.1(default) |
exonerate |
2.4.0(default) |
fastp |
0.23.4(default), 1.1.0 |
fastqc |
0.12.1(default) |
faststructure |
1.0(default) |
fasttree |
2.1.11(default) |
fastx_toolkit |
0.0.14(default) |
feems |
1.0.0(default) |
flye |
2.9.5(default) |
gatk |
3.8.1.0, 4.5.0.0(default) |
gemoma |
1.9(default) |
getorganelle |
1.7.7.0, 1.7.7.1(default) |
gone2 |
1.0.4(default) |
gphocs |
b807eb3(default) |
graftm |
0.15.1(default) |
guppy |
6.5.7(default) |
hifiasm |
0.19.8(default), 0.25.0 |
hisat2 |
2.2.1(default) |
hmmer |
3.4(default) |
htslib |
1.19.1(default) |
hybpiper |
1.3.1_final, 2.1.6(default), 2.3.3 |
illumiprocessor |
2.10(default) |
ipyrad |
0.9.94(default) |
iqtree |
1.6.12, 2.3.1(default), 2.4.0, 3.0.1 |
jellyfish |
2.3.1(default) |
kentutils |
v464 |
kraken |
2.1.3(default) |
krakenuniq |
1.0.4(default) |
mafft |
7.525(default) |
maker |
3.01.03(default) |
mapdamage2 |
2.2.2(default) |
masurca |
4.1.1(default), 4.1.4 |
megahit |
1.2.9(default) |
merqury |
1.3(default) |
migrate |
3.7.2, 5.0.6(default) |
minimap2 |
2.28(default) |
mitofinder |
1.4.1(default) |
mitos |
2.1.8(default) |
mitoz |
3.6(default) |
mrbayes |
3.2.7a(default) |
multiqc |
1.23(default) |
nextflow-qsub |
2026-06-25(default) |
ngsadmix |
32(default) |
ngstools |
d7a78e4(default) |
nucmer |
3.2.3, 4.0.0rc1(default) |
oma |
2.6.0(default) |
orthofinder |
2.5.5(default) |
paml |
4.10.0, 4.10.7(default), 4.10.10 |
partitionfinder |
2.1.1, UCE_SWSC(default) |
patchwork |
0.5.5 |
paup |
4a168(default) |
pcangsd |
1.21(default) |
phyluce |
1.6.8, 1.7.3(default) |
phynest |
0.1.12(default) |
picard-tools |
2.20.6, 3.1.1(default) |
plink |
1.90b7.2(default) |
psmc |
0.6.5(default) |
purge_dups |
1.2.6(default) |
qiime2 |
2024.2-amplicon(default), 2024.2-shotgun |
quast |
5.2.0(default) |
R |
4.4.0(default), 4.4.1, RStudio/desktop/2024.04.2-764, RStudio/server/2024.04.2-764 |
raxml |
8.2.13(default) |
raxml-ng |
1.2.1(default) |
ray |
2.3.2-devel(default) |
relernn |
1.0.0(default) |
repeatmasker |
4.1.5, 4.1.6(default), 4.1.7p1, 4.2.3 |
repeatmodeler |
2.0.5(default) |
revbayes |
1.2.2(default), 1.3.0, 1.3.2, 1.4.1 |
rohan |
1.0.1(default) |
rsem |
1.3.3(default) |
samtools |
1.19.2(default) |
seqkit |
2.8.1(default) |
seqtk |
1.4(default) |
sharkmer |
6f393f4(default), 97f19e2 |
smc++ |
1.15.2(default) |
snippy |
4.6.0(default) |
spades |
3.14.0, 3.15.5(default) |
spruceup |
v2022.2.4(default), v2024.8.20.post1 |
sratoolkit |
3.1.0(default) |
stacks |
2.66(default) |
stampy |
1.0.31(default) |
strauto |
1.0(default) |
structure |
2.3.4(default) |
tesseract |
5.5.0(default) |
transabyss |
2.0.1(default) |
transdecoder |
5.7.1(default) |
transrate |
1.0.3(default) |
treemix |
1.13(default) |
treepl |
aaa8a0e(default) |
treeshrink |
1.3.9(default) |
trimmomatic |
0.39(default) |
trim_galore |
0.6.10(default) |
trinity |
2.15.1(default) |
umi_tools |
1.1.6(default) |
vcftools |
0.1.16(default) |
whisper |
20240930(default) |
wtdbg2 |
2.5(default) |
tools/¶
| Module | Versions |
|---|---|
awscli |
2.15.27, 2.17.43(default), 2.31.36 |
bigtmp |
|
cmake |
3.3.1, 3.24.2, 4.2.0 |
conda |
3.8, 3.11, 3.13, 23.1.0(default), 23.11.0, 25.9.1 |
cpu_arch |
|
ffsend |
0.2.74, 0.2.76(default), 0.2.77 |
fl |
0.79.47, 0.79.50, 0.79.54 |
gnuparallel |
20160422 |
gv |
|
java |
1.8.0_45, 1.8.0_141, 17, 17.0.1, 18, 21, 21.0.2 |
julia |
1.2.0, 1.5.3, 1.6.3, 1.10.0, 1.10.2(default), 1.12.1 |
jupyter |
|
local |
|
local+ |
|
local-admin |
|
local-bc |
|
local-user <L:S> |
|
mamba |
24.1.2, 25.9.1(default) |
manpath |
|
misc |
|
mthread-numpy |
|
pigz |
2.3.3(default) |
python |
2.7, 3.7, 3.8, 3.9, 3.9a, 3.10, 3.11(default), 3.11b, 3.13, 3.14, use-multi-thread, use-single-thread |
python-mthread-numpy |
|
python-single-thread-numpy |
|
R |
4.4.0(default), 4.4.1, RStudio/desktop/2024.04.2-764, RStudio/server/2024.04.2-764 |
rclone |
1.62.2, 1.66.0(default), 1.71.2 |
ruby |
2.2.2, 2.6.3 |
scrubber |
|
single-thread-numpy |
|
ssd |
|
svn |
1.10.2 |
vscode |
1.91.0(default), 1.106.0 |
wget |
1.21.4(default), 2.0.1, 2.2.0 |
xv |
Last updated 2026-09-24